For structural details, please see the complementary visualization by maximum-intensity projections in Movie The initial structuring or ground work for most of these events can be traced back to the four maternal systems which establish polarity in the egg and, as a consequence, in the zygote. The data set consists of 1,, high-resolution images 11 terabytes. The pole cells are internalized along with the endoderm. What drives the segmentation? Dividing cells are marked in red and their corresponding daughter cells are shown in cyan. Digital visualization of the MZoep mutant defect in mesendoderm formation. Gastrulation to form mesoderm and endoderm – pole cells included in posterior midgut primordium.

A pair of laser scanners moves the excitation laser line vertically and horizontally. The overlay represents data set 2 at time point see below. One of the fascinating features of this cleavage type is that cells do not form until after the nuclei have divided. At the time of midblastula transition, gastrulation begins. The image processing pipeline Figure S5: Three of these segments form the thorax, while another eight segments form the abdomen. The video shows maximum-intensity projections of the fused three-dimensional image stacks.

Maternal and zygotic control of serotonin biosynthesis are both necessary for Drosophila germband extension.

The entire embryo was recorded in second intervals, using an image acquisition period of 10 seconds per time point. Rapid germ band elongation – start of first postblastoderm mitosis – ends with mesodermal parasegmentation. We tracked all nuclei reconstructed from the microscopy time-lapse data set shown in Movie 7.

Early Drosophila Development – Developmental Biology. The codec is freely available for download on the following websites: Each digital embryo database is provided as a Matlab MAT-file, containing a multi-cell array with each cell corresponding to one time point and a two-dimensional parameter table in drosophilla cell characterizing the nuclei segmented at the respective time point.


It takes about two hours, beginning 11 hours after the start of development.

The rest of this chapter is divided into three main parts. The first movements of Drosophila gastrulation segregate the presumptive mesoderm, endoderm, and ectoderm.

The drosophipa found that whereas wild-type embryos formed their cellular blastoderm immediately after the thirteenth division, the haploid embryos underwent an extra, fourteenth, division before cellularization.

The color coding superimposed on the germ layers allows you to readily understand tissue movements.

Download the Matlab database for data set 2. The parameter settings are identical to those used in Movie 9.

Digital Embryo | Janelia Research Campus

The cells were identified by their spatial position in the last time point, i. The movie shows maximum-intensity projections of a DSLM time-lapse recoding of zebrafish embryonic development, with a view on the animal hemisphere. DSLM multi-view time-lapse recording of zebrafish hlastoderm development.

Computational alignment of the four point clouds representing the nuclei detected in the four DSLM-SI views of the developing Drosophila embryo. In totalimages were recorded for time points 3 min sampling intervals. Whereas the sperm entry site may fix the axes in ascidians and nematodes, the fly’s anterior-posterior and dorsal-ventral axes are specified by interactions between the egg and its surrounding follicle cells.

The egg diameter is approximately mm.

The movie shows an orthographic rendering of the MZ oep mutant digital embryo obtained from the microscopy data shown in Movie 4, with a dorsal view on the left and a lateral view on the right. A comprehensive morphogenetic model of hypoblast formation is provided in Figure 6.


Digital Embryo

Movie 4Movie 5Movie 6. Symmetry breaking of the global cell division pattern Figure 5: See Movie 19 for sub-regions of the optical slices recorded in this experiment. Here, the rate of invagination increases, and the actin-membrane complex begins to constrict at what will be the basal end of the cell Schejter and Wieschaus ; Foe et al. The zygote nucleus undergoes several mitotic divisions within the central portion of the egg.

Interactive Fly, Drosophila

Statistical analysis of nuclear properties in the animal hemisphere Figure S4: The statistical analysis of the division axes of these 4, cell divisions is shown in Figure S6b. Global cell tracking in the dorsal hemisphere. The striped pattern leads to the segmental array of segment polarity gene transcription. This furrow demarcates head from thorax in the developing fly Costa, Transcription from the nuclei which begins around the eleventh cycle is greatly enhanced at this stage. Specification of data set 2: To reduce the file size of this video, frames were down-sampled by a bladtoderm of 6.